The best way to remove to pet arpet stains Wet towels or paper towels layered and topped by a heavy weight can quickly absorb fresh puddles. Make sure that the water flushes through the fibers in the floor. Then soak up as much of this moisture as possible using a clean dry towel, or several paper towels. The use of a wet vac may also be helpful in this situation. It’s important to locate all pet stains and clean them thoroughly, in order to ensure that the smell is gone, and the pet will not continue to use that area to relieve themselves.